Search results for "natural variation"
showing 6 items of 6 documents
Whole-genome resequencing of Cucurbita pepo morphotypes to discover genomic variants associated with morphology and horticulturally valuable traits
2019
[EN] Cucurbita pepo contains two cultivated subspecies, each of which encompasses four fruit-shape morphotypes (cultivar groups). The Pumpkin, Vegetable Marrow, Cocozelle, and Zucchini Groups are of subsp. pepo and the Acorn, Crookneck, Scallop, and Straightneck Groups are of subsp. ovifera. Recently, a de novo assembly of the C. pepo subsp. pepo Zucchini genome was published, providing insights into its evolution. To expand our knowledge of evolutionary processes within C. pepo and to identify variants associated with particular morphotypes, we performed whole-genome resequencing of seven of these eight C. pepo morphotypes. We report for the first time whole-genome resequencing of the four…
Does beak coloration of male blackbirds play a role in intra and/or intersexual selection?
2002
In many bird species, males may show brightly coloured traits and variance in male mating success may be explained by female preference and/or competition between males favouring the most coloured males. Male beak coloration has been suggested to play an important role in the pairing pattern of European blackbirds. Here, we investigate female preference and male-male interactions in relation to male beak coloration in this species. We used a field experiment to measure female and male responses toward stuffed decoys showing either of two beak coloration representing the extremes of the natural variation from yellow to orange. Decoys were situated on the centre of plots and behaviours of mal…
Assessing Human Genetic Variations in Glucose Transporter SLC2A10 and Their Role in Altering Structural and Functional Properties
2018
Purpose: Demand is increasing for clinical genomic sequencing to provide diagnoses for patients presenting phenotypes indicative of genetic diseases, but for whom routine genetic testing failed to yield a diagnosis. DNA-based testing using high-throughput technologies often identifies variants with insufficient evidence to determine whether they are disease-causal or benign, leading to categorization as variants of uncertain significance (VUS). Methods: We used molecular modeling and simulation to generate specific hypotheses for the molecular effects of variants in the human glucose transporter, GLUT10 (SLC2A10). Similar to many disease-relevant membrane proteins, no experimentally derived…
Assigning Elephant Ivory with Stable Isotopes
2016
The international ivory trade remains one of the world’s most controversial wildlife trade issues. One of the main arguments for the trade prohibition is the fact that it is very difficult to distinguish legal from illegal ivory in the markets, so that the legal ivory trade would provide a perfect cover for smuggling. The purpose of this study was to analyze the variability of isotope ratios in ivory samples from Appendix I and II elephant populations in Africa to validate their potential for forensic purposes more quantitatively. We selected a subset of 293 data of ivory samples from the www.ivoryid.org database that stores isotopic ratios of δ13C, δ15N, δ18O, δ2H, and δ34S from more than …
Natural variation of profundal macroinvertebrate communities in boreal lakes is related to lake morphometry: implications for bioassessment
2009
Modern biological assessment of aquatic systems is often based on the reference condition approach, which requires characterization of biota in undisturbed conditions. For this approach, it is essential to recognize the origins and degree of natural variation in communities. We used data from 55 minimally disturbed Finnish lake basins to investigate the natural variation of profundal macroinvertebrate community composition in relation to environmental factors. Partial canonical correspondence analysis showed that most (68% combined, 39% uniquely) of the total explained compositional variation (29%) was correlated with environmental variables insensitive to human activities, especially lake …
Origin of the natural variation in the storage of dietary carotenoids in freshwater amphipod crustaceans
2020
16 pages; International audience; Carotenoids are diverse lipophilic natural pigments which are stored in variable amounts by animals. Given the multiple biological functions of carotenoids, such variation may have strong implications in evolutionary biology. Crustaceans such as Gammarus amphipods store large amounts of these pigments and inter-population variation occurs. While differences in parasite selective pressure have been proposed to explain this variation, the contribution of other factors such as genetic differences in the gammarid ability to assimilate and/or store pigments, and the environmental availability of carotenoids cannot be dismissed. This study investigates the relati…